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Analysis of institutional authors

Puchalt, JcAuthorSanchez-Salmerón, AjCorresponding AuthorIvorra, EAuthor

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October 30, 2024
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Improving lifespan automation for Caenorhabditis elegans by using image processing and a post-processing adaptive data filter

Publicated to: Scientific Reports. 10 (1): 1-14 - 2020-01-01 10(1), DOI: 10.1038/s41598-020-65619-4

Authors:

Puchalt-Rodríguez, Joan Carles; Sánchez Salmerón, Antonio José; Ivorra Martínez, Eugenio; Genovés Martínez, Salvador; Martínez, Roberto; Martorell Guerola, Patricia
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Affiliations

Archer Daniels Midland, Biopolis SL, ADM Nutr, Cell Biol Lab - Author
Univ Politecn Valencia, Inst Automat & Informat Ind - Author

Abstract

Automated lifespan determination for C. elegans cultured in standard Petri dishes is challenging. Problems include occlusions of Petri dish edges, aggregation of worms, and accumulation of dirt (dust spots on lids) during assays, etc. This work presents a protocol for a lifespan assay, with two image-processing pipelines applied to different plate zones, and a new data post-processing method to solve the aforementioned problems. Specifically, certain steps in the culture protocol were taken to alleviate aggregation, occlusions, contamination, and condensation problems. This method is based on an active illumination system and facilitates automated image sequence analysis, does not need human threshold adjustments, and simplifies the techniques required to extract lifespan curves. In addition, two image-processing pipelines, applied to different plate zones, were employed for automated lifespan determination. The first image-processing pipeline was applied to a wall zone and used only pixel level information because worm size or shape features were unavailable in this zone. However, the second image-processing pipeline, applied to the plate centre, fused information at worm and pixel levels. Simple death event detection was used to automatically obtain lifespan curves from the image sequences that were captured once daily throughout the assay. Finally, a new post-processing method was applied to the extracted lifespan curves to filter errors. The experimental results showed that the errors in automated counting of live worms followed the Gaussian distribution with a mean of 2.91% and a standard deviation of +/- 12.73% per Petri plate. Post-processing reduced this error to 0.54 +/- 8.18% per plate. The automated survival curve incurred an error of 4.62 +/- 2.01%, while the post-process method reduced the lifespan curve error to approximately 2.24 +/- 0.55%.
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Keywords

AnimalAnimalsAutomated pattern recognitionBehaviorC.-elegansCaenorhabditis elegansClassificationFeature-extractionGeneticsGood health and well-beingImage processingImage processing, computer-assistedLongevityModelMutantNormal distributionPattern recognition, automatedPhysiologyProceduresTracking

Quality index

Bibliometric impact. Analysis of the contribution and dissemination channel

The work has been published in the journal Scientific Reports due to its progression and the good impact it has achieved in recent years, according to the agency WoS (JCR), it has become a reference in its field. In the year of publication of the work, 2020, it was in position 17/72, thus managing to position itself as a Q1 (Primer Cuartil), in the category Multidisciplinary Sciences.

Independientemente del impacto esperado determinado por el canal de difusión, es importante destacar el impacto real observado de la propia aportación.

Según las diferentes agencias de indexación, el número de citas acumuladas por esta publicación hasta la fecha 2026-04-07:

  • WoS: 12
  • Scopus: 13
  • Europe PMC: 11
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Impact and social visibility

From the perspective of influence or social adoption, and based on metrics associated with mentions and interactions provided by agencies specializing in calculating the so-called "Alternative or Social Metrics," we can highlight as of 2026-04-07:

  • The use, from an academic perspective evidenced by the Altmetric agency indicator referring to aggregations made by the personal bibliographic manager Mendeley, gives us a total of: 35.
  • The use of this contribution in bookmarks, code forks, additions to favorite lists for recurrent reading, as well as general views, indicates that someone is using the publication as a basis for their current work. This may be a notable indicator of future more formal and academic citations. This claim is supported by the result of the "Capture" indicator, which yields a total of: 35 (PlumX).

With a more dissemination-oriented intent and targeting more general audiences, we can observe other more global scores such as:

  • The Total Score from Altmetric: 2.
  • The number of mentions on the social network X (formerly Twitter): 2 (Altmetric).

It is essential to present evidence supporting full alignment with institutional principles and guidelines on Open Science and the Conservation and Dissemination of Intellectual Heritage. A clear example of this is:

  • The work has been submitted to a journal whose editorial policy allows open Open Access publication.
  • Assignment of a Handle/URN as an identifier within the deposit in the Institutional Repository: http://hdl.handle.net/10251/176162
Continuing with the social impact of the work, it is important to emphasize that, due to its content, it can be assigned to the area of interest of ODS 3 - Ensure healthy lives and promote well-being for all at all ages, with a probability of 0% according to the mBERT algorithm developed by Aurora University.
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Leadership analysis of institutional authors

There is a significant leadership presence as some of the institution’s authors appear as the first or last signer, detailed as follows: First Author (Puchalt Rodríguez, Joan Carles) .

the author responsible for correspondence tasks has been Sánchez Salmerón, Antonio José.

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Awards linked to the item

This study was also supported by the CDTI agency of the Spanish Ministry of Economy and Competitiveness with CIEN project SMARTFOODS, Universitat PolitAcnica de Valencia with Project 20170020-UPV, Plan Nacional de I + D with Project RTI2018-094312-B-I00 and by European FEDER funds. ADM Nutrition, Biopolis SL and Archer Daniels Midland provided support in the form of salaries for authors P. M. Guerola and S. G. Martinez.
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